SNP Detail For rs7808935
1.Mapping Information
Human SNP ID rs7808935
Human chromosome chr7
Human SNP position 27937744
Pig chromosome chr18
Pig SNP position 49234485
2.Annotation Information
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region7p15.1
Chromosome idchr7
Chromosome position27937744
Reported geneNR
Mapped geneJAZF1
Upstream gene id
Downstream gene id
SNP gene ids221895
Upstream gene distance
Downstream gene distance
SNP risk allelers7808935-T
SNPsrs7808935
Merged
SNP id current7808935
Contextintron_variant
Intergenic0
Allele frequency0.766
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.17
%95 Ci[1.12-1.22]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944