SNP Detail For rs7805803
1.Mapping Information
Human SNP ID rs7805803
Human chromosome chr7
Human SNP position 50185795
Pig chromosome chr9
Pig SNP position 149962220
2.Annotation Information
PubMed ID21116278
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21116278
StudyGenome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease.
Disease/TraitTotal ventricular volume (Alzheimer__s disease interaction)
Initial sample424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls
Replication sampleNA
Region7p12.2
Chromosome idchr7
Chromosome position50185795
Reported geneZPBP
Mapped geneC7orf72 - IKZF1
Upstream gene id100130988
Downstream gene id10320
SNP gene ids
Upstream gene distance26539
Downstream gene distance117670
SNP risk allelers7805803-?
SNPsrs7805803
Merged0
SNP id current7805803
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.004
%95 Ci[NR] unit decrease
PlatformIllumina [478011]
CNVN
Mapped traitAlzheimers disease, brain volume measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0006930
Study accessionGCST000892