Human SNP ID | rs7805803 |
---|---|
Human chromosome | chr7 |
Human SNP position | 50185795 |
Pig chromosome | chr9 |
Pig SNP position | 149962220 |
PubMed ID | 21116278 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/21116278 |
Study | Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease. |
Disease/Trait | Total ventricular volume (Alzheimer__s disease interaction) |
Initial sample | 424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls |
Replication sample | NA |
Region | 7p12.2 |
Chromosome id | chr7 |
Chromosome position | 50185795 |
Reported gene | ZPBP |
Mapped gene | C7orf72 - IKZF1 |
Upstream gene id | 100130988 |
Downstream gene id | 10320 |
SNP gene ids | |
Upstream gene distance | 26539 |
Downstream gene distance | 117670 |
SNP risk allele | rs7805803-? |
SNPs | rs7805803 |
Merged | 0 |
SNP id current | 7805803 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.004 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [478011] |
CNV | N |
Mapped trait | Alzheimers disease, brain volume measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0006930 |
Study accession | GCST000892 |