SNP Detail For rs7804356
1.Mapping Information
Human SNP ID rs7804356
Human chromosome chr7
Human SNP position 26852046
Pig chromosome chr18
Pig SNP position 50282729
2.Annotation Information
PubMed ID19430480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19430480
StudyGenome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.
Disease/TraitType 1 diabetes
Initial sample7,514 cases, 9,045 controls
Replication sample4,267 cases, 4,670 controls, 4,342 trios from 2,319 families
Region7p15.2
Chromosome idchr7
Chromosome position26852046
Reported geneintergenic
Mapped geneSKAP2, LOC105375204
Upstream gene id
Downstream gene id
SNP gene ids8935, 105375204
Upstream gene distance
Downstream gene distance
SNP risk allelers7804356-?
SNPsrs7804356
Merged0
SNP id current7804356
Contextintron_variant
Intergenic0
Allele frequency0.76
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.14
%95 Ci[1.06-1.22]
PlatformAffymetrix, Illumina [841622] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000392