SNP Detail For rs780179
1.Mapping Information
Human SNP ID rs780179
Human chromosome chr5
Human SNP position 22812155
Pig chromosome chr16
Pig SNP position 11894499
2.Annotation Information
PubMed ID23502783
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23502783
StudyThe CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.
Disease/TraitMultiple myeloma (IgH translocation)
Initial sampleup to 1,660 European ancestry cases, 7,306 European ancestry controls
Replication sample
Region5p14.3
Chromosome idchr5
Chromosome position22812155
Reported geneNR
Mapped geneCDH12
Upstream gene id
Downstream gene id
SNP gene ids1010
Upstream gene distance
Downstream gene distance
SNP risk allelers780179-G
SNPsrs780179
Merged0
SNP id current780179
Contextintron_variant
Intergenic0
Allele frequency0.48
P value0.0000009
Pvalue mlog6.04575749056067
P value text(t11;14 vs non t11;14)
Or beta1.59
%95 Ci[1.32-1.92]
PlatformIllumina [414804] (imputed)
CNVN
Mapped traitmultiple myeloma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001378
Study accessionGCST001906