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SNP Detail For rs780092
1.Mapping Information
| Human SNP ID | rs780092 |
|---|---|
| Human chromosome | chr2 |
| Human SNP position | 27520287 |
| Pig chromosome | chr3 |
| Pig SNP position | 118820701 |
2.Annotation Information
| PubMed ID | 21909109 |
|---|---|
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/21909109 |
| Study | Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. |
| Disease/Trait | Triglycerides |
| Initial sample | 12,545 Korean ancestry individuals |
| Replication sample | Up to 30,395 East Asian ancestry individuals |
| Region | 2p23.3 |
| Chromosome id | chr2 |
| Chromosome position | 27520287 |
| Reported gene | GCKR |
| Mapped gene | GCKR |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2646 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs780092-G |
| SNPs | rs780092 |
| Merged | 0 |
| SNP id current | 780092 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.33 |
| P value | 5E-27 |
| Pvalue mlog | 26.3010299956639 |
| P value text | |
| Or beta | 0.05 |
| %95 Ci | [0.041-0.059] mg/dL decrease |
| Platform | Affymetrix [~ 2200000] (imputed) |
| CNV | N |
| Mapped trait | triglyceride measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
| Study accession | GCST001230 |
| PubMed ID | 21909109 |
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/21909109 |
| Study | Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. |
| Disease/Trait | Metabolite levels |
| Initial sample | 12,545 Korean ancestry individuals |
| Replication sample | Up to 30,395 East Asian ancestry individuals |
| Region | 2p23.3 |
| Chromosome id | chr2 |
| Chromosome position | 27520287 |
| Reported gene | GCKR |
| Mapped gene | GCKR |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2646 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs780092-G |
| SNPs | rs780092 |
| Merged | 0 |
| SNP id current | 780092 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.33 |
| P value | 0.000000000000000005 |
| Pvalue mlog | 17.3010299956639 |
| P value text | (ALB) |
| Or beta | 0.0232 |
| %95 Ci | [-0.02972-0.07612] g/dL decrease |
| Platform | Affymetrix [~ 2200000] (imputed) |
| CNV | N |
| Mapped trait | serum albumin measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004535 |
| Study accession | GCST001233 |
| PubMed ID | 24023260 |
| Journal | J Lipid Res |
| Link | www.ncbi.nlm.nih.gov/pubmed/24023260 |
| Study | Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels. |
| Disease/Trait | Lipid traits |
| Initial sample | 1,782 Filipino ancestry mothers |
| Replication sample | 1,719 Filipino ancestry offsprings |
| Region | 2p23.3 |
| Chromosome id | chr2 |
| Chromosome position | 27520287 |
| Reported gene | GCKR |
| Mapped gene | GCKR |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2646 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs780092-A |
| SNPs | rs780092 |
| Merged | 0 |
| SNP id current | 780092 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.68 |
| P value | 0.000000002 |
| Pvalue mlog | 8.69897000433601 |
| P value text | (TG) |
| Or beta | 0.08 |
| %95 Ci | [0.060-0.100] unit increase |
| Platform | Affymetrix [~ 3700000] (imputed) |
| CNV | N |
| Mapped trait | triglyceride measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
| Study accession | GCST002174 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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