Human SNP ID | rs7800668 |
---|---|
Human chromosome | chr7 |
Human SNP position | 117818989 |
Pig chromosome | chr18 |
Pig SNP position | 30245411 |
PubMed ID | 24709693 |
---|---|
Journal | Pharmacogenomics J |
Link | www.ncbi.nlm.nih.gov/pubmed/24709693 |
Study | Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases. |
Disease/Trait | Response to methotrexate in juvenile idiopathic arthritis |
Initial sample | 694 European ancestry child cases |
Replication sample | NA |
Region | 7q31.31 |
Chromosome id | chr7 |
Chromosome position | 117818989 |
Reported gene | LSM8, CFTR, CTTNBP2 |
Mapped gene | CTTNBP2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83992 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7800668-C |
SNPs | rs7800668 |
Merged | 0 |
SNP id current | 7800668 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (ACR-pedi) |
Or beta | 1.34 |
%95 Ci | [0.75-1.93] unit decrease |
Platform | Illumina [586062] |
CNV | N |
Mapped trait | response to methotrexate, chronic childhood arthritis |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0031427, http://www.ebi.ac.uk/efo/EFO_0002609 |
Study accession | GCST002408 |