SNP Detail For rs77922938
1.Mapping Information
Human SNP ID rs77922938
Human chromosome chr9
Human SNP position 108297916
Pig chromosome chr1
Pig SNP position 279753125
2.Annotation Information
PubMed ID26621817
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26621817
StudyMeta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.
Disease/TraitColorectal or endometrial cancer
Initial sample5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls
Replication sample4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls
Region9q31.2
Chromosome idchr9
Chromosome position108297916
Reported geneKLF4
Mapped geneLOC105376214
Upstream gene id
Downstream gene id
SNP gene ids105376214
Upstream gene distance
Downstream gene distance
SNP risk allelers77922938-?
SNPsrs77922938
Merged0
SNP id current77922938
Contextintergenic_variant
Intergenic0
Allele frequency0.047
P value0.000008
Pvalue mlog5.09691001300805
P value text(opposite direction)
Or beta1.1764705
%95 Ci[1.1-1.27]
PlatformIllumina [up to 6000000] (imputed)
CNVN
Mapped traitcolorectal cancer, endometrial neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230
Study accessionGCST003208