Human SNP ID | rs77922938 |
---|---|
Human chromosome | chr9 |
Human SNP position | 108297916 |
Pig chromosome | chr1 |
Pig SNP position | 279753125 |
PubMed ID | 26621817 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26621817 |
Study | Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1. |
Disease/Trait | Colorectal or endometrial cancer |
Initial sample | 5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls |
Replication sample | 4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls |
Region | 9q31.2 |
Chromosome id | chr9 |
Chromosome position | 108297916 |
Reported gene | KLF4 |
Mapped gene | LOC105376214 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376214 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs77922938-? |
SNPs | rs77922938 |
Merged | 0 |
SNP id current | 77922938 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.047 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (opposite direction) |
Or beta | 1.1764705 |
%95 Ci | [1.1-1.27] |
Platform | Illumina [up to 6000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer, endometrial neoplasm |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230 |
Study accession | GCST003208 |