SNP Detail For rs7789940
1.Mapping Information
Human SNP ID rs7789940
Human chromosome chr7
Human SNP position 76321913
Pig chromosome chr3
Pig SNP position 9914260
2.Annotation Information
PubMed ID21654844
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/21654844
StudyGenome-wide association study of severity in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample1,470 European ancestry cases
Replication sampleNA
Region7q11.23
Chromosome idchr7
Chromosome position76321913
Reported geneLOC100289506
Mapped geneHSPB1 - YWHAG
Upstream gene id3315
Downstream gene id7532
SNP gene ids
Upstream gene distance17616
Downstream gene distance4878
SNP risk allelers7789940-G
SNPsrs7789940
Merged0
SNP id current7789940
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.19
P value0.000006
Pvalue mlog5.22184874961635
P value text(Extreme)
Or beta1.87
%95 Ci[NR]
PlatformAffymetrix [2110417] (imputed)
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001096