Human SNP ID | rs7776725 |
---|---|
Human chromosome | chr7 |
Human SNP position | 121393067 |
Pig chromosome | chr18 |
Pig SNP position | 27176907 |
PubMed ID | 19396169 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19396169 |
Study | A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. |
Disease/Trait | Biomedical quantitative traits |
Initial sample | 8,842 Korean ancestry individuals |
Replication sample | 7,861 Korean ancestry individuals |
Region | 7q31.31 |
Chromosome id | chr7 |
Chromosome position | 121393067 |
Reported gene | FAM3C |
Mapped gene | FAM3C |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10447 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7776725-C |
SNPs | rs7776725 |
Merged | 0 |
SNP id current | 7776725 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.13 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | (BD-RT) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [2156535] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000381 |
PubMed ID | 19396169 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19396169 |
Study | A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. |
Disease/Trait | Biomedical quantitative traits |
Initial sample | 8,842 Korean ancestry individuals |
Replication sample | 7,861 Korean ancestry individuals |
Region | 7q31.31 |
Chromosome id | chr7 |
Chromosome position | 121393067 |
Reported gene | FAM3C |
Mapped gene | FAM3C |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10447 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7776725-C |
SNPs | rs7776725 |
Merged | 0 |
SNP id current | 7776725 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.13 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (BD-TT) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [2156535] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000381 |
PubMed ID | 24945404 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24945404 |
Study | Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment. |
Disease/Trait | Bone mineral density (paediatric, total body less head) |
Initial sample | 8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children |
Replication sample | NA |
Region | 7q31.31 |
Chromosome id | chr7 |
Chromosome position | 121393067 |
Reported gene | FAM3C, WNT16, CPED1 |
Mapped gene | FAM3C |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10447 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7776725-C |
SNPs | rs7776725 |
Merged | 0 |
SNP id current | 7776725 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.27 |
P value | 6E-20 |
Pvalue mlog | 19.2218487496163 |
P value text | |
Or beta | 0.159 |
%95 Ci | [0.13-0.19] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002494 |
PubMed ID | 24945404 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24945404 |
Study | Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment. |
Disease/Trait | Bone mineral density (paediatric, total body less head) |
Initial sample | 8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children |
Replication sample | NA |
Region | 7q31.31 |
Chromosome id | chr7 |
Chromosome position | 121393067 |
Reported gene | FAM3C, WNT16, CPED1 |
Mapped gene | FAM3C |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10447 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7776725-C |
SNPs | rs7776725 |
Merged | 0 |
SNP id current | 7776725 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | (EA) |
Or beta | 0.1582 |
%95 Ci | [0.12-0.2] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002494 |