SNP Detail For rs77741790
1.Mapping Information
Human SNP ID rs77741790
Human chromosome chr18
Human SNP position 6894476
Pig chromosome chr6
Pig SNP position 93668229
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region18p11.31
Chromosome idchr18
Chromosome position6894476
Reported geneNR
Mapped geneARHGAP28
Upstream gene id
Downstream gene id
SNP gene ids79822
Upstream gene distance
Downstream gene distance
SNP risk allelers77741790-?
SNPsrs77741790
Merged
SNP id current77741790
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Native Hawaiian)
Or beta0.3788
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956