Human SNP ID | rs77683199 |
---|---|
Human chromosome | chr5 |
Human SNP position | 43558350 |
Pig chromosome | chr16 |
Pig SNP position | 29696673 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 5p12 |
Chromosome id | chr5 |
Chromosome position | 43558350 |
Reported gene | Intergenic |
Mapped gene | PAIP1 - NNT-AS1 |
Upstream gene id | 10605 |
Downstream gene id | 100652772 |
SNP gene ids | |
Upstream gene distance | 931 |
Downstream gene distance | 14835 |
SNP risk allele | rs77683199-A |
SNPs | rs77683199 |
Merged | 0 |
SNP id current | 77683199 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.963 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (AA) |
Or beta | 0.075 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |