SNP Detail For rs77683199
1.Mapping Information
Human SNP ID rs77683199
Human chromosome chr5
Human SNP position 43558350
Pig chromosome chr16
Pig SNP position 29696673
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region5p12
Chromosome idchr5
Chromosome position43558350
Reported geneIntergenic
Mapped genePAIP1 - NNT-AS1
Upstream gene id10605
Downstream gene id100652772
SNP gene ids
Upstream gene distance931
Downstream gene distance14835
SNP risk allelers77683199-A
SNPsrs77683199
Merged0
SNP id current77683199
Contextupstream_gene_variant
Intergenic1
Allele frequency0.963
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.075
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265