SNP Detail For rs77653389
1.Mapping Information
Human SNP ID rs77653389
Human chromosome chr1
Human SNP position 36847104
Pig chromosome chr6
Pig SNP position 86004198
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region1p34.3
Chromosome idchr1
Chromosome position36847104
Reported geneGRIK3
Mapped geneGRIK3
Upstream gene id
Downstream gene id
SNP gene ids2899
Upstream gene distance
Downstream gene distance
SNP risk allelers77653389-C
SNPsrs77653389
Merged0
SNP id current77653389
Contextintron_variant
Intergenic0
Allele frequency0.972
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.062
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264