SNP Detail For rs7763064
1.Mapping Information
Human SNP ID rs7763064
Human chromosome chr6
Human SNP position 142476152
Pig chromosome chr1
Pig SNP position 25066136
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region6q24.2
Chromosome idchr6
Chromosome position142476152
Reported geneGPR126
Mapped geneADGRG6 - LOC153910
Upstream gene id57211
Downstream gene id153910
SNP gene ids
Upstream gene distance29886
Downstream gene distance50303
SNP risk allelers7763064-A
SNPsrs7763064
Merged0
SNP id current7763064
Contextintergenic_variant
Intergenic1
Allele frequency0.29
P value1E-33
Pvalue mlog33
P value text
Or beta0.048
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25281659
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25281659
StudyA novel common variant in DCST2 is associated with length in early life and height in adulthood.
Disease/TraitBirth length
Initial sample28,459 European ancestry individuals
Replication sample16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals
Region6q24.2
Chromosome idchr6
Chromosome position142476152
Reported geneGPR126
Mapped geneADGRG6 - LOC153910
Upstream gene id57211
Downstream gene id153910
SNP gene ids
Upstream gene distance29886
Downstream gene distance50303
SNP risk allelers7763064-A
SNPsrs7763064
Merged0
SNP id current7763064
Contextintergenic_variant
Intergenic1
Allele frequency0.288
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.044
%95 Ci[0.024-0.064] unit decrease
PlatformAffymetrix, Illumina [2201971] (imputed)
CNVN
Mapped traitbody height at birth
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006784
Study accessionGCST002644