SNP Detail For rs7762544
1.Mapping Information
Human SNP ID rs7762544
Human chromosome chr6
Human SNP position 41411577
Pig chromosome chr7
Pig SNP position 41903610
2.Annotation Information
PubMed ID23459936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23459936
StudyExploring the genetic basis of chronic periodontitis: a genome-wide association study.
Disease/TraitPeriodontitis
Initial sample4,504 European ancestry individuals
Replication sample656 European ancestry and African American individuals
Region6p21.1
Chromosome idchr6
Chromosome position41411577
Reported geneNCR2
Mapped geneLOC100505711 - LOC105375058
Upstream gene id100505711
Downstream gene id105375058
SNP gene ids
Upstream gene distance28449
Downstream gene distance41312
SNP risk allelers7762544-?
SNPsrs7762544
Merged0
SNP id current7762544
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text(Moderate CPd)
Or beta1.4
%95 Ci[1.24-1.59]
PlatformAffymetrix [2135236] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST001888