Human SNP ID | rs7762544 |
---|---|
Human chromosome | chr6 |
Human SNP position | 41411577 |
Pig chromosome | chr7 |
Pig SNP position | 41903610 |
PubMed ID | 23459936 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23459936 |
Study | Exploring the genetic basis of chronic periodontitis: a genome-wide association study. |
Disease/Trait | Periodontitis |
Initial sample | 4,504 European ancestry individuals |
Replication sample | 656 European ancestry and African American individuals |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 41411577 |
Reported gene | NCR2 |
Mapped gene | LOC100505711 - LOC105375058 |
Upstream gene id | 100505711 |
Downstream gene id | 105375058 |
SNP gene ids | |
Upstream gene distance | 28449 |
Downstream gene distance | 41312 |
SNP risk allele | rs7762544-? |
SNPs | rs7762544 |
Merged | 0 |
SNP id current | 7762544 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (Moderate CPd) |
Or beta | 1.4 |
%95 Ci | [1.24-1.59] |
Platform | Affymetrix [2135236] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST001888 |