SNP Detail For rs77583790
1.Mapping Information
Human SNP ID rs77583790
Human chromosome chr3
Human SNP position 159976265
Pig chromosome chr13
Pig SNP position 108053765
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
Region3q25.33
Chromosome idchr3
Chromosome position159976265
Reported geneIL12A
Mapped geneIL12A-AS1
Upstream gene id
Downstream gene id
SNP gene ids101928376
Upstream gene distance
Downstream gene distance
SNP risk allelers77583790-A
SNPsrs77583790
Merged
SNP id current77583790
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000000006
Pvalue mlog10.2218487496163
P value text
Or beta2.15
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156