Human SNP ID | rs77583790 |
---|---|
Human chromosome | chr3 |
Human SNP position | 159976265 |
Pig chromosome | chr13 |
Pig SNP position | 108053765 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | NA |
Region | 3q25.33 |
Chromosome id | chr3 |
Chromosome position | 159976265 |
Reported gene | IL12A |
Mapped gene | IL12A-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928376 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs77583790-A |
SNPs | rs77583790 |
Merged | |
SNP id current | 77583790 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.00000000006 |
Pvalue mlog | 10.2218487496163 |
P value text | |
Or beta | 2.15 |
%95 Ci | [NR] |
Platform | Illumina [> 644674] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003156 |