Human SNP ID | rs7758229 |
---|---|
Human chromosome | chr6 |
Human SNP position | 160419220 |
Pig chromosome | chr1 |
Pig SNP position | 8832758 |
PubMed ID | 21242260 |
---|---|
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/21242260 |
Study | Common variant in 6q26-q27 is associated with distal colon cancer in an Asian population. |
Disease/Trait | Colorectal cancer |
Initial sample | 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls |
Replication sample | 4,584 Japanese ancestry cases, 225 Korean ancestry distal cases, 2,973 East Asian ancestry controls |
Region | 6q25.3 |
Chromosome id | chr6 |
Chromosome position | 160419220 |
Reported gene | SLC22A3 |
Mapped gene | SLC22A3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6581 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7758229-T |
SNPs | rs7758229 |
Merged | 0 |
SNP id current | 7758229 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000008 |
Pvalue mlog | 8.09691001300805 |
P value text | (distal colon cancer) |
Or beta | 1.28 |
%95 Ci | [1.18-1.39] |
Platform | Illumina [391749] |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST000948 |
PubMed ID | 25939597 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25939597 |
Study | Two susceptibility loci identified for prostate cancer aggressiveness. |
Disease/Trait | Prostate cancer |
Initial sample | 4,600 European ancestry cases, 2,941 European ancestry controls |
Replication sample | 7,779 European ancestry cases, 7,623 European ancestry controls |
Region | 6q25.3 |
Chromosome id | chr6 |
Chromosome position | 160419220 |
Reported gene | SLC22A3 |
Mapped gene | SLC22A3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6581 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7758229-T |
SNPs | rs7758229 |
Merged | 0 |
SNP id current | 7758229 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.10鈥?.20] |
Platform | Illumina [1531807] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002890 |