Human SNP ID | rs77542162 |
---|---|
Human chromosome | chr17 |
Human SNP position | 69085137 |
Pig chromosome | JH118785-1 |
Pig SNP position | 19629 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 17q24.2 |
Chromosome id | chr17 |
Chromosome position | 69085137 |
Reported gene | ABCA6, ABCA68 |
Mapped gene | ABCA6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23460 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs77542162-G |
SNPs | rs77542162 |
Merged | |
SNP id current | 77542162 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.02 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | |
Or beta | 0.179 |
%95 Ci | [0.13-0.23] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 17q24.2 |
Chromosome id | chr17 |
Chromosome position | 69085137 |
Reported gene | ABCA6, ABCA8 |
Mapped gene | ABCA6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23460 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs77542162-G |
SNPs | rs77542162 |
Merged | |
SNP id current | 77542162 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.02 |
P value | 0.000000000000000002 |
Pvalue mlog | 17.698970004336 |
P value text | |
Or beta | 0.22 |
%95 Ci | [0.17-0.27] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |