Human SNP ID | rs7752903 |
---|---|
Human chromosome | chr6 |
Human SNP position | 137906227 |
Pig chromosome | chr1 |
Pig SNP position | 29813998 |
PubMed ID | 24390342 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 137906227 |
Reported gene | TNFAIP3 |
Mapped gene | TNFAIP3 - LOC105378020 |
Upstream gene id | 7128 |
Downstream gene id | 105378020 |
SNP gene ids | |
Upstream gene distance | 22913 |
Downstream gene distance | 38815 |
SNP risk allele | rs7752903-G |
SNPs | rs7752903 |
Merged | 0 |
SNP id current | 7752903 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.04 |
P value | 2E-29 |
Pvalue mlog | 28.698970004336 |
P value text | |
Or beta | 1.38 |
%95 Ci | [1.31-1.46] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 137906227 |
Reported gene | TNFAIP3 |
Mapped gene | TNFAIP3 - LOC105378020 |
Upstream gene id | 7128 |
Downstream gene id | 105378020 |
SNP gene ids | |
Upstream gene distance | 22913 |
Downstream gene distance | 38815 |
SNP risk allele | rs7752903-G |
SNPs | rs7752903 |
Merged | 0 |
SNP id current | 7752903 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 2E-20 |
Pvalue mlog | 19.698970004336 |
P value text | (EA) |
Or beta | 1.41 |
%95 Ci | [1.31-1.52] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 137906227 |
Reported gene | TNFAIP3 |
Mapped gene | TNFAIP3 - LOC105378020 |
Upstream gene id | 7128 |
Downstream gene id | 105378020 |
SNP gene ids | |
Upstream gene distance | 22913 |
Downstream gene distance | 38815 |
SNP risk allele | rs7752903-G |
SNPs | rs7752903 |
Merged | 0 |
SNP id current | 7752903 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.07 |
P value | 0.00000000007 |
Pvalue mlog | 10.1549019599857 |
P value text | (East Asian) |
Or beta | 1.34 |
%95 Ci | [1.23-1.46] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |