Human SNP ID | rs7742369 |
---|---|
Human chromosome | chr6 |
Human SNP position | 34197944 |
Pig chromosome | chr7 |
Pig SNP position | 34959521 |
PubMed ID | 20189936 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20189936 |
Study | A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. |
Disease/Trait | Height |
Initial sample | 19,633 Japanese ancestry individuals |
Replication sample | NA |
Region | 6p21.31 |
Chromosome id | chr6 |
Chromosome position | 34197944 |
Reported gene | HMGA1 |
Mapped gene | KRT18P9 - HMGA1 |
Upstream gene id | 442205 |
Downstream gene id | 3159 |
SNP gene ids | |
Upstream gene distance | 6803 |
Downstream gene distance | 38856 |
SNP risk allele | rs7742369-G |
SNPs | rs7742369 |
Merged | 0 |
SNP id current | 7742369 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.14 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.08-0.14] cm increase |
Platform | Illumina [420885] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000611 |