SNP Detail For rs7742369
1.Mapping Information
Human SNP ID rs7742369
Human chromosome chr6
Human SNP position 34197944
Pig chromosome chr7
Pig SNP position 34959521
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region6p21.31
Chromosome idchr6
Chromosome position34197944
Reported geneHMGA1
Mapped geneKRT18P9 - HMGA1
Upstream gene id442205
Downstream gene id3159
SNP gene ids
Upstream gene distance6803
Downstream gene distance38856
SNP risk allelers7742369-G
SNPsrs7742369
Merged0
SNP id current7742369
Contextintergenic_variant
Intergenic1
Allele frequency0.14
P value0.0000000000001
Pvalue mlog13
P value text
Or beta0.11
%95 Ci[0.08-0.14] cm increase
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611