SNP Detail For rs7740797
1.Mapping Information
Human SNP ID rs7740797
Human chromosome chr6
Human SNP position 154800125
Pig chromosome chr1
Pig SNP position 14113993
2.Annotation Information
PubMed ID26621817
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26621817
StudyMeta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.
Disease/TraitColorectal or endometrial cancer
Initial sample5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls
Replication sampleNA
Region6q25.2
Chromosome idchr6
Chromosome position154800125
Reported geneSCAF8
Mapped geneSCAF8
Upstream gene id
Downstream gene id
SNP gene ids22828
Upstream gene distance
Downstream gene distance
SNP risk allelers7740797-G
SNPsrs7740797
Merged0
SNP id current7740797
Contextintron_variant
Intergenic0
Allele frequency0.513
P value0.0000002
Pvalue mlog6.69897000433601
P value text(same direction)
Or beta1.12
%95 Ci[1.07-1.16]
PlatformIllumina [up to 6000000] (imputed)
CNVN
Mapped traitcolorectal cancer, endometrial neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230
Study accessionGCST003209