Human SNP ID | rs77329626 |
---|---|
Human chromosome | chr10 |
Human SNP position | 59904437 |
Pig chromosome | chr14 |
Pig SNP position | 68272139 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 10q21.2 |
Chromosome id | chr10 |
Chromosome position | 59904437 |
Reported gene | NR |
Mapped gene | CCDC6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8030 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs77329626-? |
SNPs | rs77329626 |
Merged | |
SNP id current | 77329626 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (AA) |
Or beta | 1.4476 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |