SNP Detail For rs7731626
1.Mapping Information
Human SNP ID rs7731626
Human chromosome chr5
Human SNP position 56148856
Pig chromosome chr16
Pig SNP position 37353103
2.Annotation Information
PubMed ID24390342
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/24390342
StudyGenetics of rheumatoid arthritis contributes to biology and drug discovery.
Disease/TraitRheumatoid arthritis
Initial sampleup to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls
Replication sampleup to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls
Region5q11.2
Chromosome idchr5
Chromosome position56148856
Reported geneANKRD55
Mapped geneANKRD55
Upstream gene id
Downstream gene id
SNP gene ids79722
Upstream gene distance
Downstream gene distance
SNP risk allelers7731626-G
SNPsrs7731626
Merged0
SNP id current7731626
Contextintron_variant
Intergenic0
Allele frequency0.63
P value8E-23
Pvalue mlog22.096910013008
P value text(EA)
Or beta1.21
%95 Ci[1.17-1.26]
PlatformAffymetrix, Illumina [up to 9739303] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002318
PubMed ID26301688
JournalNat Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26301688
StudyMeta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.
Disease/TraitPediatric autoimmune diseases
Initial sample97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position56148856
Reported geneANKRD55
Mapped geneANKRD55
Upstream gene id
Downstream gene id
SNP gene ids79722
Upstream gene distance
Downstream gene distance
SNP risk allelers7731626-A
SNPsrs7731626
Merged0
SNP id current7731626
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.0000000001
Pvalue mlog10
P value text
Or beta
%95 Ci
PlatformIllumina [7347414] (imputed)
CNVN
Mapped traitautoimmune thyroid disease, type I diabetes mellitus, Common variable immunodeficiency, chronic childhood arthritis, ankylosing spondylitis, psoriasis, celiac disease, ulcerative colitis, Crohn__s disease, autoimmune disease, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0001359, http://www.orpha.net/ORDO/Orphanet_1572, http://www.ebi.ac.uk/efo/EFO_0002609, http://www.ebi.ac.uk/efo/EFO_0003898, http://www.ebi.ac.uk/efo/EFO_0000676, http://www.ebi.ac.uk/efo
Study accessionGCST003097