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SNP Detail For rs7731390
1.Mapping Information
| Human SNP ID | rs7731390 |
|---|---|
| Human chromosome | chr5 |
| Human SNP position | 132386057 |
| Pig chromosome | chr2 |
| Pig SNP position | 140081455 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 5q31.1 |
| Chromosome id | chr5 |
| Chromosome position | 132386057 |
| Reported gene | NR |
| Mapped gene | SLC22A5 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 6584 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7731390-C |
| SNPs | rs7731390 |
| Merged | 0 |
| SNP id current | 7731390 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.947724237786775 |
| P value | 0.000003 |
| Pvalue mlog | 5.52287874528033 |
| P value text | (IGP2) |
| Or beta | 0.3771 |
| %95 Ci | [0.22-0.53] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 5q31.1 |
| Chromosome id | chr5 |
| Chromosome position | 132386057 |
| Reported gene | NR |
| Mapped gene | SLC22A5 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 6584 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7731390-C |
| SNPs | rs7731390 |
| Merged | 0 |
| SNP id current | 7731390 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.947771454651685 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (IGP42) |
| Or beta | 0.3846 |
| %95 Ci | [0.23-0.54] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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