SNP Detail For rs7727544
1.Mapping Information
Human SNP ID rs7727544
Human chromosome chr5
Human SNP position 132254841
Pig chromosome chr2
Pig SNP position 139956435
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position132254841
Reported geneSLC22A4
Mapped geneP4HA2 - PDLIM4
Upstream gene id8974
Downstream gene id8572
SNP gene ids
Upstream gene distance26978
Downstream gene distance2817
SNP risk allelers7727544-T
SNPsrs7727544
Merged0
SNP id current7727544
Contextintron_variant
Intergenic1
Allele frequency0.56
P value0.0000000000000007
Pvalue mlog15.1549019599857
P value text(propionylcarnitine)
Or beta0.015
%95 Ci[0.011-0.019] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443