SNP Detail For rs7725052
1.Mapping Information
Human SNP ID rs7725052
Human chromosome chr5
Human SNP position 40487168
Pig chromosome chr16
Pig SNP position 26774393
2.Annotation Information
PubMed ID26301688
JournalNat Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26301688
StudyMeta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.
Disease/TraitPediatric autoimmune diseases
Initial sample97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry
Replication sampleNA
Region5p13.1
Chromosome idchr5
Chromosome position40487168
Reported genePTGER4
Mapped geneLOC105374736 - LOC105374737
Upstream gene id105374736
Downstream gene id105374737
SNP gene ids
Upstream gene distance140613
Downstream gene distance112712
SNP risk allelers7725052-C
SNPsrs7725052
Merged
SNP id current7725052
Contextregulatory_region_variant
Intergenic1
Allele frequency0.43
P value0.00000000008
Pvalue mlog10.096910013008
P value text
Or beta
%95 Ci
PlatformIllumina [7347414] (imputed)
CNVN
Mapped traitautoimmune thyroid disease, type I diabetes mellitus, Common variable immunodeficiency, chronic childhood arthritis, ankylosing spondylitis, psoriasis, celiac disease, ulcerative colitis, Crohn__s disease, autoimmune disease, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0001359, http://www.orpha.net/ORDO/Orphanet_1572, http://www.ebi.ac.uk/efo/EFO_0002609, http://www.ebi.ac.uk/efo/EFO_0003898, http://www.ebi.ac.uk/efo/EFO_0000676, http://www.ebi.ac.uk/efo
Study accessionGCST003097