SNP Detail For rs77206040
1.Mapping Information
Human SNP ID rs77206040
Human chromosome chr22
Human SNP position 44075243
Pig chromosome chr5
Pig SNP position 2394843
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region22q13.31
Chromosome idchr22
Chromosome position44075243
Reported geneNR
Mapped genePARVB
Upstream gene id
Downstream gene id
SNP gene ids29780
Upstream gene distance
Downstream gene distance
SNP risk allelers77206040-?
SNPsrs77206040
Merged
SNP id current77206040
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Native Hawaiian)
Or beta1.2408
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956