Human SNP ID | rs7717393 |
---|---|
Human chromosome | chr5 |
Human SNP position | 156326904 |
Pig chromosome | chr16 |
Pig SNP position | 72618741 |
PubMed ID | 25710614 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25710614 |
Study | Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children. |
Disease/Trait | Egg allergy |
Initial sample | 217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 156326904 |
Reported gene | SGCD |
Mapped gene | LOC105377674, SGCD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377674, 6444 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7717393-? |
SNPs | rs7717393 |
Merged | 0 |
SNP id current | 7717393 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [6459842] (imputed) |
CNV | N |
Mapped trait | egg allergy measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007018 |
Study accession | GCST002789 |