SNP Detail For rs7717393
1.Mapping Information
Human SNP ID rs7717393
Human chromosome chr5
Human SNP position 156326904
Pig chromosome chr16
Pig SNP position 72618741
2.Annotation Information
PubMed ID25710614
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25710614
StudyGenome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.
Disease/TraitEgg allergy
Initial sample217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls
Replication sampleNA
Region5q33.3
Chromosome idchr5
Chromosome position156326904
Reported geneSGCD
Mapped geneLOC105377674, SGCD
Upstream gene id
Downstream gene id
SNP gene ids105377674, 6444
Upstream gene distance
Downstream gene distance
SNP risk allelers7717393-?
SNPsrs7717393
Merged0
SNP id current7717393
Context5_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformIllumina [6459842] (imputed)
CNVN
Mapped traitegg allergy measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007018
Study accessionGCST002789