SNP Detail For rs7713917
1.Mapping Information
Human SNP ID rs7713917
Human chromosome chr5
Human SNP position 79533426
Pig chromosome chr2
Pig SNP position 90070104
2.Annotation Information
PubMed ID20673876
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20673876
StudyGenome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.
Disease/TraitMajor depressive disorder
Initial sample597 European ancestry cases, 1,295 European ancestry controls
Replication sample409 European ancestry cases, 541 European ancestry controls
Region5q14.1
Chromosome idchr5
Chromosome position79533426
Reported geneHOMER1
Mapped geneRPL7AP32 - LOC105379047
Upstream gene id133748
Downstream gene id105379047
SNP gene ids
Upstream gene distance3275
Downstream gene distance14147
SNP risk allelers7713917-G
SNPsrs7713917
Merged0
SNP id current7713917
Contextupstream_gene_variant
Intergenic1
Allele frequency0.6
P value0.000001
Pvalue mlog6
P value text
Or beta1.33
%95 Ci[1.19-1.49]
PlatformIllumina [491238]
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000743