Human SNP ID | rs7713917 |
---|---|
Human chromosome | chr5 |
Human SNP position | 79533426 |
Pig chromosome | chr2 |
Pig SNP position | 90070104 |
PubMed ID | 20673876 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20673876 |
Study | Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression. |
Disease/Trait | Major depressive disorder |
Initial sample | 597 European ancestry cases, 1,295 European ancestry controls |
Replication sample | 409 European ancestry cases, 541 European ancestry controls |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79533426 |
Reported gene | HOMER1 |
Mapped gene | RPL7AP32 - LOC105379047 |
Upstream gene id | 133748 |
Downstream gene id | 105379047 |
SNP gene ids | |
Upstream gene distance | 3275 |
Downstream gene distance | 14147 |
SNP risk allele | rs7713917-G |
SNPs | rs7713917 |
Merged | 0 |
SNP id current | 7713917 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.6 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.19-1.49] |
Platform | Illumina [491238] |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST000743 |