Human SNP ID | rs7708392 |
---|---|
Human chromosome | chr5 |
Human SNP position | 151077924 |
Pig chromosome | chr16 |
Pig SNP position | 78335884 |
PubMed ID | 26606652 |
---|---|
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/26606652 |
Study | GWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls |
Replication sample | NA |
Region | 5q33.1 |
Chromosome id | chr5 |
Chromosome position | 151077924 |
Reported gene | TNIP1 |
Mapped gene | TNIP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10318 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7708392-C |
SNPs | rs7708392 |
Merged | 0 |
SNP id current | 7708392 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.499 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 1.76 |
%95 Ci | [1.50-2.07] |
Platform | Illumina [580483] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003252 |