SNP Detail For rs7708392
1.Mapping Information
Human SNP ID rs7708392
Human chromosome chr5
Human SNP position 151077924
Pig chromosome chr16
Pig SNP position 78335884
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region5q33.1
Chromosome idchr5
Chromosome position151077924
Reported geneTNIP1
Mapped geneTNIP1
Upstream gene id
Downstream gene id
SNP gene ids10318
Upstream gene distance
Downstream gene distance
SNP risk allelers7708392-C
SNPsrs7708392
Merged0
SNP id current7708392
Contextintron_variant
Intergenic0
Allele frequency0.499
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.76
%95 Ci[1.50-2.07]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252