SNP Detail For rs77040403
1.Mapping Information
Human SNP ID rs77040403
Human chromosome chr10
Human SNP position 69881082
Pig chromosome chr14
Pig SNP position 78788273
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region10q22.1
Chromosome idchr10
Chromosome position69881082
Reported geneNR
Mapped geneCOL13A1
Upstream gene id
Downstream gene id
SNP gene ids1305
Upstream gene distance
Downstream gene distance
SNP risk allelers77040403-?
SNPsrs77040403
Merged
SNP id current77040403
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Native Hawaiian)
Or beta0.7427
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957