Human SNP ID | rs76788097 |
---|---|
Human chromosome | chr14 |
Human SNP position | 61262775 |
Pig chromosome | chr1 |
Pig SNP position | 211509807 |
PubMed ID | 25569183 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25569183 |
Study | A genome-wide association study of marginal zone lymphoma shows association to the HLA region. |
Disease/Trait | Marginal zone lymphoma |
Initial sample | 825 European ancestry cases, 6,221 European ancestry controls |
Replication sample | 456 European ancestry cases, 906 European ancestry controls |
Region | 14q23.1 |
Chromosome id | chr14 |
Chromosome position | 61262775 |
Reported gene | intergenic |
Mapped gene | LOC105378182 - TMEM30B |
Upstream gene id | 105378182 |
Downstream gene id | 161291 |
SNP gene ids | |
Upstream gene distance | 139898 |
Downstream gene distance | 14595 |
SNP risk allele | rs76788097-G |
SNPs | rs76788097 |
Merged | 0 |
SNP id current | 76788097 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.062 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.53 |
%95 Ci | [1.28-1.82] |
Platform | Illumina [611856] |
CNV | N |
Mapped trait | marginal zone B-cell lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000630 |
Study accession | GCST002742 |