SNP Detail For rs76788097
1.Mapping Information
Human SNP ID rs76788097
Human chromosome chr14
Human SNP position 61262775
Pig chromosome chr1
Pig SNP position 211509807
2.Annotation Information
PubMed ID25569183
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25569183
StudyA genome-wide association study of marginal zone lymphoma shows association to the HLA region.
Disease/TraitMarginal zone lymphoma
Initial sample825 European ancestry cases, 6,221 European ancestry controls
Replication sample456 European ancestry cases, 906 European ancestry controls
Region14q23.1
Chromosome idchr14
Chromosome position61262775
Reported geneintergenic
Mapped geneLOC105378182 - TMEM30B
Upstream gene id105378182
Downstream gene id161291
SNP gene ids
Upstream gene distance139898
Downstream gene distance14595
SNP risk allelers76788097-G
SNPsrs76788097
Merged0
SNP id current76788097
Contextintron_variant
Intergenic1
Allele frequency0.062
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.53
%95 Ci[1.28-1.82]
PlatformIllumina [611856]
CNVN
Mapped traitmarginal zone B-cell lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000630
Study accessionGCST002742