SNP Detail For rs7664805
1.Mapping Information
Human SNP ID rs7664805
Human chromosome chr4
Human SNP position 105922801
Pig chromosome chr8
Pig SNP position 124123799
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region4q24
Chromosome idchr4
Chromosome position105922801
Reported geneNPNT
Mapped geneNPNT
Upstream gene id
Downstream gene id
SNP gene ids255743
Upstream gene distance
Downstream gene distance
SNP risk allelers7664805-C
SNPsrs7664805
Merged0
SNP id current7664805
Contextintron_variant
Intergenic0
Allele frequency0.085
P value0.000001
Pvalue mlog6
P value text
Or beta0.141
%95 CiNR unit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region4q24
Chromosome idchr4
Chromosome position105922801
Reported geneNPNT
Mapped geneNPNT
Upstream gene id
Downstream gene id
SNP gene ids255743
Upstream gene distance
Downstream gene distance
SNP risk allelers7664805-C
SNPsrs7664805
Merged0
SNP id current7664805
Contextintron_variant
Intergenic0
Allele frequency0.084
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.028
%95 Ciunit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264