SNP Detail For rs765899
1.Mapping Information
Human SNP ID rs765899
Human chromosome chr14
Human SNP position 68497029
Pig chromosome chr7
Pig SNP position 98502279
2.Annotation Information
PubMed ID23468962
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23468962
StudyA genome-wide scan for breast cancer risk haplotypes among African American women.
Disease/TraitBreast cancer
Initial sample3,016 African American cases, 2,745 African American controls
Replication sampleNA
Region14q24.1
Chromosome idchr14;14;14;14;14;14
Chromosome position68497029;68506829;68507560;68505059;68500665;68508657
Reported gene
Mapped geneRAD51B; RAD51B; RAD51B; RAD51B; RAD51B; RAD51B
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers765899-?; rs757369-?; rs10132579-?; rs2842347-?; rs737387-?; rs2842346-?
SNPsrs765899; rs757369; rs10132579; rs2842347; rs737387; rs2842346
Merged0
SNP id current
Contextintron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.67
%95 Ci[1.35-2.08]
PlatformIllumina [1006480]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001879