Human SNP ID | rs76588427 |
---|---|
Human chromosome | chr2 |
Human SNP position | 20935927 |
Pig chromosome | chr3 |
Pig SNP position | 125208891 |
PubMed ID | 25569183 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25569183 |
Study | A genome-wide association study of marginal zone lymphoma shows association to the HLA region. |
Disease/Trait | Marginal zone lymphoma |
Initial sample | 825 European ancestry cases, 6,221 European ancestry controls |
Replication sample | 456 European ancestry cases, 906 European ancestry controls |
Region | 2p24.1 |
Chromosome id | chr2 |
Chromosome position | 20935927 |
Reported gene | intergenic |
Mapped gene | LOC101928271 - APOB |
Upstream gene id | 101928271 |
Downstream gene id | 338 |
SNP gene ids | |
Upstream gene distance | 74266 |
Downstream gene distance | 63291 |
SNP risk allele | rs76588427-A |
SNPs | rs76588427 |
Merged | 0 |
SNP id current | 76588427 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.017 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 2.05 |
%95 Ci | [1.52-2.76] |
Platform | Illumina [611856] |
CNV | N |
Mapped trait | marginal zone B-cell lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000630 |
Study accession | GCST002742 |