SNP Detail For rs76588427
1.Mapping Information
Human SNP ID rs76588427
Human chromosome chr2
Human SNP position 20935927
Pig chromosome chr3
Pig SNP position 125208891
2.Annotation Information
PubMed ID25569183
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25569183
StudyA genome-wide association study of marginal zone lymphoma shows association to the HLA region.
Disease/TraitMarginal zone lymphoma
Initial sample825 European ancestry cases, 6,221 European ancestry controls
Replication sample456 European ancestry cases, 906 European ancestry controls
Region2p24.1
Chromosome idchr2
Chromosome position20935927
Reported geneintergenic
Mapped geneLOC101928271 - APOB
Upstream gene id101928271
Downstream gene id338
SNP gene ids
Upstream gene distance74266
Downstream gene distance63291
SNP risk allelers76588427-A
SNPsrs76588427
Merged0
SNP id current76588427
Contextintergenic_variant
Intergenic1
Allele frequency0.017
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.05
%95 Ci[1.52-2.76]
PlatformIllumina [611856]
CNVN
Mapped traitmarginal zone B-cell lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000630
Study accessionGCST002742