Human SNP ID | rs7655625 |
---|---|
Human chromosome | chr4 |
Human SNP position | 144564763 |
Pig chromosome | chr8 |
Pig SNP position | 89012497 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 4q31.21 |
Chromosome id | chr4 |
Chromosome position | 144564763 |
Reported gene | Intergenic |
Mapped gene | LOC105377462 - KRT18P51 |
Upstream gene id | 105377462 |
Downstream gene id | 391703 |
SNP gene ids | |
Upstream gene distance | 2258 |
Downstream gene distance | 7475 |
SNP risk allele | rs7655625-T |
SNPs | rs7655625 |
Merged | 0 |
SNP id current | 7655625 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.43 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 0.053 |
%95 Ci | NR unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366 |
Study accession | GCST003262 |
PubMed ID | 26634245 |
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 4q31.21 |
Chromosome id | chr4 |
Chromosome position | 144564763 |
Reported gene | Intergenic |
Mapped gene | LOC105377462 - KRT18P51 |
Upstream gene id | 105377462 |
Downstream gene id | 391703 |
SNP gene ids | |
Upstream gene distance | 2258 |
Downstream gene distance | 7475 |
SNP risk allele | rs7655625-T |
SNPs | rs7655625 |
Merged | 0 |
SNP id current | 7655625 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.497 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.011 |
%95 Ci | NR unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |
PubMed ID | 26634245 |
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Pre bronchodilator FEV1/FVC ratio |
Initial sample | 6,659 European ancestry current and former smoker individuals |
Replication sample | NA |
Region | 4q31.21 |
Chromosome id | chr4 |
Chromosome position | 144564763 |
Reported gene | LOC646576, HHIP |
Mapped gene | LOC105377462 - KRT18P51 |
Upstream gene id | 105377462 |
Downstream gene id | 391703 |
SNP gene ids | |
Upstream gene distance | 2258 |
Downstream gene distance | 7475 |
SNP risk allele | rs7655625-? |
SNPs | rs7655625 |
Merged | 0 |
SNP id current | 7655625 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.01471 |
%95 Ci | unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003267 |
PubMed ID | 26634245 |
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 4q31.21 |
Chromosome id | chr4 |
Chromosome position | 144564763 |
Reported gene | Intergenic |
Mapped gene | LOC105377462 - KRT18P51 |
Upstream gene id | 105377462 |
Downstream gene id | 391703 |
SNP gene ids | |
Upstream gene distance | 2258 |
Downstream gene distance | 7475 |
SNP risk allele | rs7655625-T |
SNPs | rs7655625 |
Merged | 0 |
SNP id current | 7655625 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.43 |
P value | 0.00000000000006 |
Pvalue mlog | 13.2218487496163 |
P value text | |
Or beta | 0.013 |
%95 Ci | unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003264 |