SNP Detail For rs7649739
1.Mapping Information
Human SNP ID rs7649739
Human chromosome chr3
Human SNP position 65413223
Pig chromosome chr13
Pig SNP position 51745099
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region3p14.1
Chromosome idchr3
Chromosome position65413223
Reported geneNR
Mapped geneMAGI1
Upstream gene id
Downstream gene id
SNP gene ids9223
Upstream gene distance
Downstream gene distance
SNP risk allelers7649739-G
SNPsrs7649739
Merged0
SNP id current7649739
Contextintron_variant
Intergenic0
Allele frequency0.358836830440587
P value0.000006
Pvalue mlog5.22184874961635
P value text(IGP57)
Or beta0.1501
%95 Ci[0.085-0.215] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848