Human SNP ID | rs76495833 |
---|---|
Human chromosome | chr3 |
Human SNP position | 30627911 |
Pig chromosome | chr13 |
Pig SNP position | 18676663 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 3p24.1 |
Chromosome id | chr3 |
Chromosome position | 30627911 |
Reported gene | TGFBR2 |
Mapped gene | TGFBR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7048 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs76495833-C |
SNPs | rs76495833 |
Merged | |
SNP id current | 76495833 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.04 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (EA) |
Or beta | 0.4484 |
%95 Ci | [0.29-0.61] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 3p24.1 |
Chromosome id | chr3 |
Chromosome position | 30627911 |
Reported gene | TGFBR2 |
Mapped gene | TGFBR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7048 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs76495833-C |
SNPs | rs76495833 |
Merged | |
SNP id current | 76495833 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.04 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.3689 |
%95 Ci | [0.22-0.52] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |