Human SNP ID | rs7648642 |
---|---|
Human chromosome | chr3 |
Human SNP position | 119542528 |
Pig chromosome | chr13 |
Pig SNP position | 150043333 |
PubMed ID | 24080446 |
---|---|
Journal | Endocr Relat Cancer |
Link | www.ncbi.nlm.nih.gov/pubmed/24080446 |
Study | Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study. |
Disease/Trait | Lobular breast cancer (menopausal hormone therapy interaction) |
Initial sample | 541 European ancestry cases |
Replication sample | 676 European ancestry cases, 9,266 European ancestry controls |
Region | 3q13.33 |
Chromosome id | chr3 |
Chromosome position | 119542528 |
Reported gene | CD80 |
Mapped gene | CD80 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 941 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7648642-? |
SNPs | rs7648642 |
Merged | 0 |
SNP id current | 7648642 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.5625 |
%95 Ci | [1.28-1.89] |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | invasive lobular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000553 |
Study accession | GCST002266 |