SNP Detail For rs7648642
1.Mapping Information
Human SNP ID rs7648642
Human chromosome chr3
Human SNP position 119542528
Pig chromosome chr13
Pig SNP position 150043333
2.Annotation Information
PubMed ID24080446
JournalEndocr Relat Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/24080446
StudyGenetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.
Disease/TraitLobular breast cancer (menopausal hormone therapy interaction)
Initial sample541 European ancestry cases
Replication sample676 European ancestry cases, 9,266 European ancestry controls
Region3q13.33
Chromosome idchr3
Chromosome position119542528
Reported geneCD80
Mapped geneCD80
Upstream gene id
Downstream gene id
SNP gene ids941
Upstream gene distance
Downstream gene distance
SNP risk allelers7648642-?
SNPsrs7648642
Merged0
SNP id current7648642
Contextintron_variant
Intergenic0
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.5625
%95 Ci[1.28-1.89]
PlatformIllumina [2500000] (imputed)
CNVN
Mapped traitinvasive lobular carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000553
Study accessionGCST002266