SNP Detail For rs7644516
1.Mapping Information
Human SNP ID rs7644516
Human chromosome chr3
Human SNP position 25880794
Pig chromosome chr13
Pig SNP position 14386597
2.Annotation Information
PubMed ID23725790
JournalTwin Res Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23725790
StudyGWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.
Disease/TraitDNA methylation (variation)
Initial sample256 European ancestry individuals
Replication sample384 European ancestry individuals
Region3p24.2
Chromosome idchr3
Chromosome position25880794
Reported geneAC103588.1
Mapped geneLINC00692 - LOC105377001
Upstream gene id285326
Downstream gene id105377001
SNP gene ids
Upstream gene distance7099
Downstream gene distance184080
SNP risk allelers7644516-G
SNPsrs7644516
Merged0
SNP id current7644516
Contextintergenic_variant
Intergenic1
Allele frequency0.12
P value0.000004
Pvalue mlog5.39794000867203
P value text(KvDMR)
Or beta
%95 Ci
PlatformIllumina [515966]
CNVN
Mapped traitDNA methylation
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0006306
Study accessionGCST002058