Human SNP ID | rs7641175 |
---|---|
Human chromosome | chr3 |
Human SNP position | 18269920 |
Pig chromosome | chr13 |
Pig SNP position | 5922702 |
PubMed ID | 22139419 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/22139419 |
Study | New gene functions in megakaryopoiesis and platelet formation. |
Disease/Trait | Platelet count |
Initial sample | 47,005 European ancestry individuals, 1,661 Val Borbera individuals |
Replication sample | Up to 18,838 European ancestry individuals |
Region | 3p24.3 |
Chromosome id | chr3 |
Chromosome position | 18269920 |
Reported gene | SATB1 |
Mapped gene | LOC339862 - SATB1 |
Upstream gene id | 339862 |
Downstream gene id | 6304 |
SNP gene ids | |
Upstream gene distance | 998 |
Downstream gene distance | 75886 |
SNP risk allele | rs7641175-A |
SNPs | rs7641175 |
Merged | 0 |
SNP id current | 7641175 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 2.757 |
%95 Ci | [1.94-3.57] 10^9/l increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | platelet count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004309 |
Study accession | GCST001337 |