SNP Detail For rs7632299
1.Mapping Information
Human SNP ID rs7632299
Human chromosome chr3
Human SNP position 143337625
Pig chromosome chr13
Pig SNP position 91805920
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (lobular)
Initial sample236 European ancestry cases
Replication sampleNA
Region3q24
Chromosome idchr3
Chromosome position143337625
Reported geneintergenic
Mapped geneSLC9A9
Upstream gene id
Downstream gene id
SNP gene ids285195
Upstream gene distance
Downstream gene distance
SNP risk allelers7632299-A
SNPsrs7632299
Merged0
SNP id current7632299
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.45
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000766