SNP Detail For rs76270203
1.Mapping Information
Human SNP ID rs76270203
Human chromosome chr12
Human SNP position 113499191
Pig chromosome chr14
Pig SNP position 40940463
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region12q24.13
Chromosome idchr12
Chromosome position113499191
Reported geneNR
Mapped geneLHX5-AS1 - LOC105369990
Upstream gene id104355219
Downstream gene id105369990
SNP gene ids
Upstream gene distance18710
Downstream gene distance139852
SNP risk allelers76270203-?
SNPsrs76270203
Merged0
SNP id current76270203
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279