Human SNP ID | rs7620503 |
---|---|
Human chromosome | chr3 |
Human SNP position | 177586510 |
Pig chromosome | chr13 |
Pig SNP position | 124909470 |
PubMed ID | 23291589 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23291589 |
Study | Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus. |
Disease/Trait | Corneal structure |
Initial sample | 13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals |
Replication sample | NA |
Region | 3q26.32 |
Chromosome id | chr3 |
Chromosome position | 177586510 |
Reported gene | TBL1XR1, KCNMB2 |
Mapped gene | LINC00578, LOC105374232 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100505566, 105374232 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7620503-T |
SNPs | rs7620503 |
Merged | 0 |
SNP id current | 7620503 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.04-0.08] unit decrease |
Platform | Affymetrix, Illumina [~ 1000000] (imputed) |
CNV | N |
Mapped trait | corneal topography |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004345 |
Study accession | GCST001806 |