Human SNP ID | rs761998 |
---|---|
Human chromosome | chr20 |
Human SNP position | 14329306 |
Pig chromosome | chr17 |
Pig SNP position | 25676032 |
PubMed ID | 25897833 |
---|---|
Journal | Transl Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25897833 |
Study | Genome-wide association study of behavioural and psychiatric features in human prion disease. |
Disease/Trait | Mood disorder in prion disease |
Initial sample | Up to 170 cases |
Replication sample | NA |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 14329306 |
Reported gene | FLRT3 |
Mapped gene | FLRT3, MACROD2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23767, 140733 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs761998-? |
SNPs | rs761998 |
Merged | 0 |
SNP id current | 761998 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.352 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 2.86 |
%95 Ci | [1.82-4.55] |
Platform | Illumina [518938] |
CNV | N |
Mapped trait | prion disease, mood disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004720, http://www.ebi.ac.uk/efo/EFO_0004247 |
Study accession | GCST002864 |