SNP Detail For rs76177788
1.Mapping Information
Human SNP ID rs76177788
Human chromosome chr12
Human SNP position 86150461
Pig chromosome chr5
Pig SNP position 100816214
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region12q21.31
Chromosome idchr12
Chromosome position86150461
Reported geneMGAT4C
Mapped geneMGAT4C
Upstream gene id
Downstream gene id
SNP gene ids25834
Upstream gene distance
Downstream gene distance
SNP risk allelers76177788-T
SNPsrs76177788
Merged0
SNP id current76177788
Contextintron_variant
Intergenic0
Allele frequency1
P value0.0000004
Pvalue mlog6.39794000867203
P value text(AA)
Or beta0.49
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264