SNP Detail For rs7617480
1.Mapping Information
Human SNP ID rs7617480
Human chromosome chr3
Human SNP position 49173299
Pig chromosome chr13
Pig SNP position 35007939
2.Annotation Information
PubMed ID21102462
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102462
StudyThirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
Disease/TraitMenarche (age at onset)
Initial sample86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals
Replication sampleUp to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals
Region3p21.31
Chromosome idchr3
Chromosome position49173299
Reported geneKLHDC8B
Mapped geneKLHDC8B
Upstream gene id
Downstream gene id
SNP gene ids200942
Upstream gene distance
Downstream gene distance
SNP risk allelers7617480-A
SNPsrs7617480
Merged0
SNP id current7617480
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta2.4
%95 Ci[1.62-3.18] week decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000880