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SNP Detail For rs7616559
1.Mapping Information
| Human SNP ID | rs7616559 |
|---|---|
| Human chromosome | chr3 |
| Human SNP position | 157010821 |
| Pig chromosome | chr13 |
| Pig SNP position | 104999051 |
2.Annotation Information
| PubMed ID | 25898001 |
|---|---|
| Journal | Atherosclerosis |
| Link | www.ncbi.nlm.nih.gov/pubmed/25898001 |
| Study | Genetic variants in LEKR1 and GALNT10 modulate sex-difference in carotid intima-media thickness: A genome-wide interaction study. |
| Disease/Trait | Carotid artery intima media thickness (sex interaction) |
| Initial sample | 931 Hispanics individuals |
| Replication sample | 153 European ancestry individuals, 257 Black individuals |
| Region | 3q25.31 |
| Chromosome id | chr3 |
| Chromosome position | 157010821 |
| Reported gene | LEKR1 |
| Mapped gene | LEKR1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 389170 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7616559-G |
| SNPs | rs7616559 |
| Merged | 0 |
| SNP id current | 7616559 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.29 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (Model 1) |
| Or beta | 0.035 |
| %95 Ci | [0.021-0.049] unit increase |
| Platform | Affymetrix [731037] |
| CNV | N |
| Mapped trait | carotid artery intima media thickness |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007117 |
| Study accession | GCST002856 |
| PubMed ID | 25898001 |
| Journal | Atherosclerosis |
| Link | www.ncbi.nlm.nih.gov/pubmed/25898001 |
| Study | Genetic variants in LEKR1 and GALNT10 modulate sex-difference in carotid intima-media thickness: A genome-wide interaction study. |
| Disease/Trait | Carotid artery intima media thickness (sex interaction) |
| Initial sample | 931 Hispanics individuals |
| Replication sample | 153 European ancestry individuals, 257 Black individuals |
| Region | 3q25.31 |
| Chromosome id | chr3 |
| Chromosome position | 157010821 |
| Reported gene | LEKR1 |
| Mapped gene | LEKR1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 389170 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7616559-G |
| SNPs | rs7616559 |
| Merged | 0 |
| SNP id current | 7616559 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.26 |
| P value | 0.000004 |
| Pvalue mlog | 5.39794000867203 |
| P value text | (Model 1, Hispanics) |
| Or beta | 0.04 |
| %95 Ci | [0.022-0.058] unit increase |
| Platform | Affymetrix [731037] |
| CNV | N |
| Mapped trait | carotid artery intima media thickness |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007117 |
| Study accession | GCST002856 |
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