SNP Detail For rs76124550
1.Mapping Information
Human SNP ID rs76124550
Human chromosome chr10
Human SNP position 112626980
Pig chromosome chr14
Pig SNP position 134267220
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region10q25.2
Chromosome idchr10
Chromosome position112626980
Reported geneNR
Mapped geneVTI1A
Upstream gene id
Downstream gene id
SNP gene ids143187
Upstream gene distance
Downstream gene distance
SNP risk allelers76124550-?
SNPsrs76124550
Merged
SNP id current76124550
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(Latino)
Or beta1.0661
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957