SNP Detail For rs7610017
1.Mapping Information
Human SNP ID rs7610017
Human chromosome chr3
Human SNP position 189625635
Pig chromosome chr13
Pig SNP position 136304113
2.Annotation Information
PubMed ID20100581
JournalNeuroimage
Linkwww.ncbi.nlm.nih.gov/pubmed/20100581
StudyWhole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.
Disease/TraitBrain imaging
Initial sample175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls
Replication sampleNA
Region3q28
Chromosome idchr3
Chromosome position189625635
Reported geneTP63
Mapped geneTP63
Upstream gene id
Downstream gene id
SNP gene ids8626
Upstream gene distance
Downstream gene distance
SNP risk allelers7610017-?
SNPsrs7610017
Merged
SNP id current7610017
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value
Pvalue mlog
P value text<1 x 10-6 (multiple phenotypes)
Or beta
%95 Ci
PlatformIllumina [530992]
CNVN
Mapped traitneuroimaging measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004346
Study accessionGCST000573