SNP Detail For rs7601754
1.Mapping Information
Human SNP ID rs7601754
Human chromosome chr2
Human SNP position 191075725
Pig chromosome chr15
Pig SNP position 106959988
2.Annotation Information
PubMed ID23740937
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23740937
StudyA systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
Disease/TraitSystemic lupus erythematosus and Systemic sclerosis
Initial sampleup to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls
Replication sampleup to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls
Region2q32.2
Chromosome idchr2
Chromosome position191075725
Reported geneSTAT4
Mapped geneSTAT4
Upstream gene id
Downstream gene id
SNP gene ids6775
Upstream gene distance
Downstream gene distance
SNP risk allelers7601754-?
SNPsrs7601754
Merged0
SNP id current7601754
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.32
%95 Ci[NR]
PlatformIllumina [NR]
CNVN
Mapped traitsystemic scleroderma, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000717, http://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST002069